Okay update to this with the answer. For some reason the Nautolan skinpack causes an issue in JAEnhanced where when equiped your primary blade will not engage. I don't know why and I don't know a solution, but for anyone using this skinpack be aware of this unless someone finds a solution.
I Have no clue if this needs to be closed by a moderator or anything but, sorry for the post only to discover the issue myself.
Professor Mor's post in singleplayer main lightsaber wont display and has no hitbox was marked as the answer